{ "_id": "6a2329fa530b9bc726bce604", "Package": "broman", "Version": "0.93-3", "Date": "2026-06-05", "Title": "Karl Broman's R Code", "Description": "Miscellaneous R functions, including functions related to\ngraphics (mostly for base graphics), permutation tests, running\nmean/median, and general utilities.", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")),\nperson(\"Aimee Teo\", \"Broman\", role=\"ctb\",\ncomment=c(ORCID = \"0000-0003-3783-2807\")))", "Author": "Karl W Broman [aut, cre]\n(), Aimee Teo Broman\n[ctb] ()", "Maintainer": "Karl W Broman ", "License": "GPL-3", "URL": "https://github.com/kbroman/broman", "BugReports": "https://github.com/kbroman/broman/issues", "Encoding": "UTF-8", "ByteCompile": "true", "LazyData": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-06-05 14:35:16 UTC", "RemoteUrl": "https://github.com/kbroman/broman", "RemoteRef": "HEAD", "RemoteSha": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-05 19:51:47 UTC", "User": "root" }, "MD5sum": "e2070751c65da1f3e8c47a9d951efab4", "_user": "kbroman", "_type": "src", "_file": "broman_0.93-3.tar.gz", "_fileid": "8c4d73ddeafbe7e60dc25b9cfc76b8b0691b785a5382cb97e0dfea6fb7b25e21", "_filesize": 475840, "_sha256": "8c4d73ddeafbe7e60dc25b9cfc76b8b0691b785a5382cb97e0dfea6fb7b25e21", "_created": "2026-06-05T19:51:47.000Z", "_published": "2026-06-05T19:56:42.734Z", "_distro": "noble", "_jobs": [ { "job": 79802565269, "time": 159, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7445563299" }, { "job": 79802565280, "time": 147, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7445558844" }, { "job": 79802565398, "time": 138, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7445557133" }, { "job": 79802565301, "time": 151, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7445560171" }, { "job": 79802565242, "time": 119, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7445550639" }, { "job": 79802565234, "time": 168, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7445567466" }, { "job": 79802565295, "time": 89, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7445542210" }, { "job": 79802565281, "time": 247, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7445590961" }, { "job": 79802069810, "time": 191, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7445515706" }, { "job": 79802565188, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7445552138" }, { "job": 79802565233, "time": 94, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7445543748" }, { "job": 79802565263, "time": 98, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7445544862" }, { "job": 79802565206, "time": 92, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7445542894" } ], "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/kbroman/broman", "_commit": { "id": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "bump version; add to NEWS\n", "time": 1780670116 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.15.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 4, "_updates": [ { "week": "2025-23", "n": 4 }, { "week": "2025-24", "n": 2 }, { "week": "2025-31", "n": 1 }, { "week": "2025-36", "n": 1 }, { "week": "2025-41", "n": 3 }, { "week": "2025-50", "n": 2 }, { "week": "2026-21", "n": 1 }, { "week": "2026-23", "n": 8 } ], "_tags": [ { "name": "0.86", "date": "2025-06-08" }, { "name": "0.88", "date": "2025-09-03" }, { "name": "0.90", "date": "2025-10-09" }, { "name": "0.92", "date": "2025-12-08" } ], "_stars": 183, "_contributors": [ { "user": "kbroman", "count": 372, "uuid": 53972 }, { "user": "jianan", "count": 2, "uuid": 1790598 }, { "user": "aramirezreyes", "count": 1, "uuid": 6992761 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 5384, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/broman" }, "_mentions": 2, "_devurl": "https://github.com/kbroman/broman", "_searchresults": 592, "_rbuild": "4.6.0", "_assets": [ "extra/broman.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/kbroman/broman", "_realowner": "kbroman", "_cranurl": true, "_releases": [ { "version": "0.38-2", "date": "2012-10-15" }, { "version": "0.39-1", "date": "2012-10-18" }, { "version": "0.44-1", "date": "2014-02-06" }, { "version": "0.48-2", "date": "2014-05-07" }, { "version": "0.55-2", "date": "2015-04-22" }, { "version": "0.59-5", "date": "2015-08-05" }, { "version": "0.62-1", "date": "2016-01-05" }, { "version": "0.64-3", "date": "2016-09-19" }, { "version": "0.65-1", "date": "2016-12-01" }, { "version": "0.65-4", "date": "2017-05-28" }, { "version": "0.67-4", "date": "2017-12-08" }, { "version": "0.68-2", "date": "2018-07-25" }, { "version": "0.69-5", "date": "2019-04-11" }, { "version": "0.70-4", "date": "2020-05-22" }, { "version": "0.71-6", "date": "2020-11-24" }, { "version": "0.72-4", "date": "2021-02-05" }, { "version": "0.76", "date": "2021-10-11" }, { "version": "0.80", "date": "2022-07-08" }, { "version": "0.82", "date": "2024-05-05" }, { "version": "0.84", "date": "2024-05-18" }, { "version": "0.86", "date": "2025-06-08" }, { "version": "0.88", "date": "2025-09-03" }, { "version": "0.90", "date": "2025-10-10" }, { "version": "0.92", "date": "2025-12-11" } ], "_exports": [ "%nin%", "%win%", "%wnin%", "add_commas", "align_vectors", "arrowlocator", "attrnames", "brocolors", "bromanversion", "cf", "chisq", "ciplot", "colwalpha", "compare_rows", "convert2hex", "crayons", "dec2hex", "dotplot", "excel_fig", "exit", "fac2num", "fisher", "get_precision", "grayplot", "grayplot_na", "h", "hex2dec", "histlines", "jiggle", "karl_theme", "kbdate", "lenuniq", "make", "manyboxplot", "maxabs", "mypairs", "myround", "normalize", "objectsizes", "openfile", "paired.perm.test", "paste.", "paste..", "paste.0", "paste0.", "paste00", "perm.test", "pick_more_precise", "plot_crayons", "qqline2", "qr2", "quantileSE", "revgray", "revrainbow", "rmvn", "runningmean", "runningratio", "runningratio2", "setRNGparallel", "simp", "spell_out", "strwidth2lines", "strwidth2xlim", "switchv", "theme_karl", "time_axis", "timeplot", "trap", "triarrow", "trigrid", "trilines", "triplot", "tripoints", "tritext", "twocolorpal", "unsetRNGparallel", "vec2string", "venn", "winsorize", "xlimlabel" ], "_datasets": [ { "name": "numbers", "title": "Numbers spelled out in English", "object": "numbers", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "Numbers", "title": "Numbers spelled out in English", "object": "numbers-cap", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "notin", "title": "Value matching", "topics": [ "%nin%", "%win%", "%wnin%" ] }, { "page": "add_commas", "title": "Add commas to a large number", "topics": [ "add_commas" ] }, { "page": "align_vectors", "title": "Align two vectors", "topics": [ "align_vectors" ] }, { "page": "arrowlocator", "title": "Use the locator function to plot an arrow", "topics": [ "arrowlocator" ] }, { "page": "attrnames", "title": "Get names of attributes", "topics": [ "attrnames" ] }, { "page": "brocolors", "title": "Vectors of colors for figures", "topics": [ "brocolors" ] }, { "page": "bromanversion", "title": "Installed version of R/broman", "topics": [ "bromanversion" ] }, { "page": "cf", "title": "Compare objects, including missing data pattern", "topics": [ "cf", "cf.default", "cf.list" ] }, { "page": "chisq", "title": "Chi-square test by simulation for a two-way table", "topics": [ "chisq" ] }, { "page": "ciplot", "title": "Effect plot with multiple CIs for different groups", "topics": [ "ciplot" ] }, { "page": "colwalpha", "title": "Convert a color to use alpha transparency", "topics": [ "colwalpha" ] }, { "page": "compare_rows", "title": "Compare rows in a matrix", "topics": [ "compare_rows" ] }, { "page": "convert2hex", "title": "Convert decimal to hex", "topics": [ "convert2hex", "dec2hex" ] }, { "page": "crayons", "title": "Crayon colors", "topics": [ "crayons" ] }, { "page": "dotplot", "title": "Dot chart with a gray background", "topics": [ "dotplot" ] }, { "page": "excel_fig", "title": "Excel-style figure displaying contents of a matrix", "topics": [ "excel_fig" ] }, { "page": "exit", "title": "exit R without saving", "topics": [ "exit" ] }, { "page": "fac2num", "title": "Convert a factor to numeric", "topics": [ "fac2num" ] }, { "page": "fisher", "title": "Fisher's exact test for a two-way table", "topics": [ "fisher" ] }, { "page": "get_precision", "title": "Determine the precision of a number", "topics": [ "get_precision" ] }, { "page": "grayplot", "title": "Scatterplot with a gray background", "topics": [ "grayplot" ] }, { "page": "grayplot_na", "title": "Scatterplot with missing values indicated", "topics": [ "grayplot_na" ] }, { "page": "h", "title": "View html version of help file", "topics": [ "h" ] }, { "page": "hex2dec", "title": "Convert from hex to decimal", "topics": [ "hex2dec" ] }, { "page": "histlines", "title": "Utility to create line-based histogram", "topics": [ "histlines" ] }, { "page": "jiggle", "title": "Jiggle points horizontally", "topics": [ "jiggle" ] }, { "page": "kbdate", "title": "My little date facility", "topics": [ "kbdate" ] }, { "page": "lenuniq", "title": "Number of unique values", "topics": [ "lenuniq" ] }, { "page": "make", "title": "Run make within a package directory", "topics": [ "make" ] }, { "page": "manyboxplot", "title": "Boxplot-like figure for many groups", "topics": [ "manyboxplot" ] }, { "page": "maxabs", "title": "maximum of absolute value", "topics": [ "maxabs" ] }, { "page": "mypairs", "title": "My scatterplot matrix", "topics": [ "mypairs" ] }, { "page": "myround", "title": "Round a number, preserving extra 0's", "topics": [ "myround" ] }, { "page": "normalize", "title": "Quantile normalization", "topics": [ "normalize" ] }, { "page": "numbers", "title": "Numbers spelled out in English", "topics": [ "Numbers", "numbers" ] }, { "page": "objectsizes", "title": "Calculate sizes of all objects in workspace", "topics": [ "objectsizes" ] }, { "page": "openfile", "title": "Open a file", "topics": [ "openfile" ] }, { "page": "paired.perm.test", "title": "Paired permutation t-test", "topics": [ "paired.perm.test" ] }, { "page": "paste.", "title": "paste with dot separator", "topics": [ "paste." ] }, { "page": "paste00", "title": "paste with null or dot as separator and with collapse", "topics": [ "paste..", "paste.0", "paste0.", "paste00" ] }, { "page": "perm.test", "title": "Permutation t-test", "topics": [ "perm.test" ] }, { "page": "pick_more_precise", "title": "Pick the more precise value for each element in two related vectors", "topics": [ "pick_more_precise" ] }, { "page": "plot_crayons", "title": "Illustration of crayon colors", "topics": [ "plot_crayons" ] }, { "page": "qqline2", "title": "qqline for qqplot", "topics": [ "qqline2" ] }, { "page": "qr2", "title": "The QR decomposition of a matrix", "topics": [ "qr2" ] }, { "page": "quantileSE", "title": "Sample quantiles and their standard errors", "topics": [ "quantileSE" ] }, { "page": "revgray", "title": "Create vector of colors from white to black", "topics": [ "revgray" ] }, { "page": "revrainbow", "title": "Create vector of colors from blue to red", "topics": [ "revrainbow" ] }, { "page": "rmvn", "title": "Simulate multivariate normal", "topics": [ "rmvn" ] }, { "page": "runningmean", "title": "Running mean, sum, or median", "topics": [ "runningmean" ] }, { "page": "runningratio", "title": "Running ratio", "topics": [ "runningratio" ] }, { "page": "runningratio2", "title": "Running ratio with adaptive window", "topics": [ "runningratio2" ] }, { "page": "setRNGparallel", "title": "Set up random number generation for parallel calculations", "topics": [ "setRNGparallel", "unsetRNGparallel" ] }, { "page": "simp", "title": "Numerical integration", "topics": [ "simp", "trap" ] }, { "page": "spell_out", "title": "Spell out an integer", "topics": [ "spell_out" ] }, { "page": "strwidth2lines", "title": "Calculate width of a character string in number of lines", "topics": [ "strwidth2lines" ] }, { "page": "strwidth2xlim", "title": "Calculate horizontal limit in user coordinates for adding labels", "topics": [ "strwidth2xlim" ] }, { "page": "switchv", "title": "Vectorized version of switch", "topics": [ "switchv" ] }, { "page": "theme_karl", "title": "Karl's ggplot2 theme", "topics": [ "karl_theme", "theme_karl" ] }, { "page": "time_axis", "title": "Set up a time-based axis", "topics": [ "time_axis" ] }, { "page": "timeplot", "title": "Scatterplot with date/times on the x-axis", "topics": [ "timeplot" ] }, { "page": "triarrow", "title": "Plot an arrow within a Holmans triangle", "topics": [ "triarrow" ] }, { "page": "trigrid", "title": "Add grid lines to triplot", "topics": [ "trigrid" ] }, { "page": "trilines", "title": "Plot lines within a Holmans triangle", "topics": [ "trilines" ] }, { "page": "triplot", "title": "Plot Holmans triangle", "topics": [ "triplot" ] }, { "page": "tripoints", "title": "Plot points within a Holmans triangle", "topics": [ "tripoints" ] }, { "page": "tritext", "title": "Plot text within a Holmans triangle", "topics": [ "tritext" ] }, { "page": "twocolorpal", "title": "Create vector of colors from blue to white to red", "topics": [ "twocolorpal" ] }, { "page": "vec2string", "title": "Turn a vector into a single character string", "topics": [ "vec2string" ] }, { "page": "venn", "title": "Plot to-scale Venn diagram", "topics": [ "venn" ] }, { "page": "winsorize", "title": "Winsorize a vector", "topics": [ "winsorize" ] }, { "page": "xlimlabel", "title": "Calulate horizontal limit in user coordinates for adding labels", "topics": [ "xlimlabel" ] } ], "_pkglogo": "https://github.com/kbroman/broman/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/kbroman/broman/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 10.04917907637282, "_indexed": true, "_nocasepkg": "broman", "_universes": [ "kbroman" ], "_previous": "0.93-2", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.93-3", "date": "2026-06-05T19:54:32.000Z", "distro": "noble", "arch": "aarch64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "4e66b2a72783bcbf161f59a67c4190c0b6d46733a25a154415a2358bab6e470c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.7.0", "os": "linux", "version": "0.93-3", "date": "2026-06-05T19:54:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "2b988c3cf799158af31aab9768455d916ae057b932e02e692996da173ac92422", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "linux", "version": "0.93-3", "date": "2026-06-05T19:54:11.000Z", "distro": "noble", "arch": "aarch64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "56fe735e5f69975e52c70fcfdaaf8982f950043ef332b489951eea76f59f3c63", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "linux", "version": "0.93-3", "date": "2026-06-05T19:54:15.000Z", "distro": "noble", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "bd4cb1f76d3eb2f7a399edfa3e8f570ed895236a464c0c1191d4e8f03b01537e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.5.3", "os": "mac", "version": "0.93-3", "date": "2026-06-05T19:53:43.000Z", "arch": "aarch64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "37b0615deb4a9c40a76bc6bb8d53b544651c16ebeede25bceaa4f888f76972b7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.5.3", "os": "mac", "version": "0.93-3", "date": "2026-06-05T19:54:30.000Z", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "e05b4613d577ac662f7075c89d067ff7413e0c1996cce92578b6bfa0e9bce0fc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "mac", "version": "0.93-3", "date": "2026-06-05T19:53:17.000Z", "arch": "aarch64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "3a7fe028eed06857fbc1b928fc364a5fa9dd69cb03332cf038f01086371b55ad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "mac", "version": "0.93-3", "date": "2026-06-05T19:55:14.000Z", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "879eca2902f8bb4a58f2edeeca72fb98ddbc9a2c492060ffe803668cfa66eab5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "wasm", "version": "0.93-3", "date": "2026-06-05T19:54:09.000Z", "arch": "emscripten", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "1d3a83823901736a77c7837448b6ab2ea67c7730745c039a7e810995ba48202f", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.7.0", "os": "win", "version": "0.93-3", "date": "2026-06-05T19:53:08.000Z", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "7ed29fa15bec2e7124dca692c3699dd3aea5bbf340dddd9d6906584621abb86c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.5.3", "os": "win", "version": "0.93-3", "date": "2026-06-05T19:53:10.000Z", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "ea38f4a19cae186f5912aece1d8630b93a72abd1bc6e58b12335140cd7cf0074", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" }, { "r": "4.6.0", "os": "win", "version": "0.93-3", "date": "2026-06-05T19:53:05.000Z", "arch": "x86_64", "commit": "e8bfbb8f1fa6338cc47da17d1478842e7fca8b8f", "fileid": "0109819d311bf79ebdc1df16dc370020e8308d45f8012c84f26b4a28c46c39c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27036582783" } ] }