{ "_id": "6a3549da3efcd9bda43e88d5", "Package": "fingers", "Version": "0.60-6", "Date": "2026-05-05", "Title": "Identifying Clusters of Related Individuals", "Author": "Karl W Broman [aut, cre]\n(), Laura Plantinga\n[ctb]", "Maintainer": "Karl W Broman ", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")),\nperson(\"Laura\", \"Plantinga\", role=\"ctb\"))", "Description": "Identifying clusters of related individuals.", "License": "GPL-3", "URL": "https://github.com/kbroman/fingers", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-06-19 11:25:07 UTC", "RemoteUrl": "https://github.com/kbroman/fingers", "RemoteRef": "HEAD", "RemoteSha": "7e5f033ee8ae905815b05314743d1d1345bae212", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-19 13:37:43 UTC", "User": "root" }, "MD5sum": "6c656a3f50c92325ab0192b4e5992804", "_user": "kbroman", "_type": "src", "_file": "fingers_0.60-6.tar.gz", "_fileid": "706ad62b88211ecc0db16ea78740f281dde228e6e428874ef87b04fcbb79e8b9", "_filesize": 187932, "_sha256": "706ad62b88211ecc0db16ea78740f281dde228e6e428874ef87b04fcbb79e8b9", "_created": "2026-06-19T13:37:43.000Z", "_published": "2026-06-19T13:53:30.393Z", "_distro": "noble", "_jobs": [ { "job": 82360887507, "time": 100, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7751144697" }, { "job": 82360887511, "time": 93, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7751141170" }, { "job": 82360887521, "time": 133, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7751156093" }, { "job": 82360887516, "time": 95, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7751142100" }, { "job": 82360887513, "time": 90, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7751324186" }, { "job": 82360887523, "time": 184, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7751376267" }, { "job": 82360887519, "time": 82, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7751162175" }, { "job": 82360887543, "time": 285, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7751429662" }, { "job": 82360424677, "time": 163, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7751106723" }, { "job": 82360887508, "time": 81, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7751136815" }, { "job": 82360887495, "time": 84, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7751137865" }, { "job": 82360887496, "time": 66, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7751131822" }, { "job": 82360887510, "time": 191, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7751184397" } ], "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/kbroman/fingers", "_commit": { "id": "7e5f033ee8ae905815b05314743d1d1345bae212", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "Remove name from README\n", "time": 1781868307 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.1", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 4 }, { "week": "2026-23", "n": 1 }, { "week": "2026-25", "n": 1 } ], "_tags": [], "_stars": 2, "_contributors": [ { "user": "kbroman", "count": 41, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "followers": 1478, "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fingers" }, "_devurl": "https://github.com/kbroman/fingers", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fingers.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "avesd.Dsib", "avesd.Dur", "calc.dist", "choose.rev", "cluster.stat", "cluster.stat.sub", "comp.fams", "cutoff", "cutoff.llr", "dist.image", "fingers", "freq", "inherit", "inherit2", "llrdist", "Msib", "Mur", "parse.hclust", "parse.hclust.all", "pull.markers", "samppop", "simrapd", "simulfams", "true.fams" ], "_datasets": [ { "name": "aedes", "title": "Data on Aedes aegypti", "object": "aedes", "file": "aedes.RData", "class": [ "matrix", "array" ], "fields": [ "C04.1", "C04.2", "C04.3", "C04.4", "C04.5", "C04.6", "C04.7", "C04.8", "C04.9", "C09.1", "C09.2", "C09.3", "C09.4", "C09.5", "C09.6", "C09.7", "C13.1", "C13.2", "C13.3", "C13.4", "C13.5", "C13.6", "C13.7", "C13.8", "C13.9", "C16.1", "C16.2", "C16.3", "C16.4", "C16.5", "C16.6", "C19.1", "C19.2", "C19.3", "C19.4", "C19.5", "C19.6", "C19.7", "C19.8", "C19.9" ], "rows": 150, "table": true, "tojson": true }, { "name": "shiff1", "title": "Schistosome data", "object": "shiff1", "file": "shiff1.RData", "class": [ "matrix", "array" ], "fields": [ "a02.1410", "a02.1360", "a02.1260", "a02.1200", "a02.1090", "a02.1005", "a02.890", "a02.850", "a02.800", "a02.760", "a02.630", "a02.610", "a02.510", "a02.490", "a02.410", "a02.390", "a02.305", "a12.1210", "a12.870", "a12.810", "a12.720", "a12.510", "a12.410", "a12.350", "a12.200", "a12.180", "g11.1300", "g11.1210", "g11.1100", "g11.1000", "g11.890", "g11.870", "g11.790", "g11.760", "g11.430", "g11.410", "g11.400", "g11.370", "g11.360", "g11.350", "z08.1400", "z08.1150", "z08.1090", "z08.1070", "z08.950", "z08.840", "z08.670", "z08.660", "z08.630", "z08.590", "z08.460", "z08.420", "z08.390", "z08.380" ], "rows": 135, "table": true, "tojson": true }, { "name": "shiff2", "title": "Schistosome data", "object": "shiff2", "file": "shiff2.RData", "class": [ "matrix", "array" ], "fields": [ "a02.630", "a12.510", "g11.1300", "g11.1210", "g11.760", "g11.430", "g11.360", "z08.1090", "z08.1070", "z08.390" ], "rows": 135, "table": true, "tojson": true }, { "name": "shiff3", "title": "Schistosome data", "object": "shiff3", "file": "shiff3.RData", "class": [ "matrix", "array" ], "fields": [ "a02.630", "a12.510", "g11.1300", "g11.1210", "g11.760", "g11.430", "g11.360", "z08.1090", "z08.1070", "z08.390" ], "rows": 125, "table": true, "tojson": true } ], "_help": [ { "page": "aedes", "title": "Data on Aedes aegypti", "topics": [ "aedes" ] }, { "page": "calc.dist", "title": "Calculate simple distance matrix", "topics": [ "calc.dist" ] }, { "page": "cluster.stat", "title": "Calculate measure of quality of inferred clusters", "topics": [ "cluster.stat" ] }, { "page": "comp.fams", "title": "Compare two sets of clusters", "topics": [ "comp.fams" ] }, { "page": "cutoff", "title": "Calculate cutoff for clustering with RAPD markers", "topics": [ "cutoff" ] }, { "page": "cutoff.llr", "title": "Calculate cutoff for clustering with RAPD markers", "topics": [ "cutoff.llr" ] }, { "page": "dist.image", "title": "Plot distance matrix", "topics": [ "dist.image" ] }, { "page": "fingers", "title": "Infer clusters of related individuals", "topics": [ "fingers" ] }, { "page": "freq", "title": "Estimate RAPD allele frequencies", "topics": [ "freq" ] }, { "page": "llrdist", "title": "Calculate distance matrix based on log likelihood ratio", "topics": [ "llrdist" ] }, { "page": "pull.markers", "title": "Extract markers with allele frequencies in specified range", "topics": [ "pull.markers" ] }, { "page": "shiff1", "title": "Schistosome data", "topics": [ "shiff1" ] }, { "page": "shiff2", "title": "Schistosome data", "topics": [ "shiff2" ] }, { "page": "shiff3", "title": "Schistosome data", "topics": [ "shiff3" ] }, { "page": "simrapd", "title": "Simulate RAPD data", "topics": [ "simrapd" ] }, { "page": "simulfams", "title": "Simulate RAPD data", "topics": [ "simulfams" ] }, { "page": "true.fams", "title": "Identify the true clusters", "topics": [ "true.fams" ] } ], "_readme": "https://github.com/kbroman/fingers/raw/HEAD/README.md", "_rundeps": [], "_score": 2.4771212547196626, "_indexed": true, "_nocasepkg": "fingers", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.60-6", "date": "2026-06-19T13:39:36.000Z", "distro": "noble", "arch": "aarch64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "74c365ebb9a99a0acb6a45d1ff0d6b3fe23ac6d5e0e5ceea3348a98ae6c71e25", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.7.0", "os": "linux", "version": "0.60-6", "date": "2026-06-19T13:39:23.000Z", "distro": "noble", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "b28772fe35ece74ff96c5ce50aa884a636592b0cc544d5622b66963c12c0137f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "linux", "version": "0.60-6", "date": "2026-06-19T13:40:08.000Z", "distro": "noble", "arch": "aarch64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "f3bc16add3f2a993aae59d57dd9f1144ac99c5ff5b3c8b6d723296ef6072040b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "linux", "version": "0.60-6", "date": "2026-06-19T13:39:26.000Z", "distro": "noble", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "3c860c1028572fc20a0c39345b752dd85078af27303376ade852d8e05984e18e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.5.3", "os": "mac", "version": "0.60-6", "date": "2026-06-19T13:48:01.000Z", "arch": "aarch64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "7b8ecdb6acb7518e31aad9d9a89646ba8b1da58f19b7b686a9e542ffe74025af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.5.3", "os": "mac", "version": "0.60-6", "date": "2026-06-19T13:50:22.000Z", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "384d43a790754b0d40839a43af8460933cac9edecf4f82b02ec38cea1d2aad9f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "mac", "version": "0.60-6", "date": "2026-06-19T13:40:22.000Z", "arch": "aarch64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "1f8cc20feda1c56859547884e55ce16059bcb42c60616f5666e9900bbcca8b86", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "mac", "version": "0.60-6", "date": "2026-06-19T13:52:35.000Z", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "967660c8d218b158c22c0d7e92f61abc3fa3098bc26029d8c871af041cf61cb0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "wasm", "version": "0.60-6", "date": "2026-06-19T13:39:21.000Z", "arch": "emscripten", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "bad2d63e24ddd9365254454c235e4db76a6b6a412f058d78db136d524db4e5cd", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.7.0", "os": "win", "version": "0.60-6", "date": "2026-06-19T13:39:02.000Z", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "dd4026c7c9eabf583a930c0339c75e67e41d9634b7cc85e0b04540bbf46e06da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.5.3", "os": "win", "version": "0.60-6", "date": "2026-06-19T13:38:46.000Z", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "2a13354188322a2ce3163b620ba7eda8ccded8ad648e4844303507d3153fe5f2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" }, { "r": "4.6.0", "os": "win", "version": "0.60-6", "date": "2026-06-19T13:40:52.000Z", "arch": "x86_64", "commit": "7e5f033ee8ae905815b05314743d1d1345bae212", "fileid": "2ceae3e87e3d2692365e4525ac85f38f119df435b952cf57e9b77cf65304f30b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27828919832" } ] }