{ "_id": "6ac0c5b891601a2ad2998aa4", "Package": "lmmlite", "Version": "0.2-2", "Date": "2019-03-10", "Title": "Simple LMM Fitter for QTL Mapping", "Description": "A port of parts of 'pylmm' for fitting linear mixed models\nrelevant to genome-wide association studies (GWAS) and\nquantitative trait locus (QTL) mapping.", "Author": "Karl W Broman [aut, cre] (ORCID:\n, (closely following the\npylmm code by Nick Furlotte))", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\",\n\"(closely following the pylmm code by Nick Furlotte)\")))", "Maintainer": "Karl W Broman ", "License": "AGPL-3", "URL": "https://kbroman.org/lmmlite/, https://github.com/kbroman/lmmlite", "BugReports": "https://github.com/kbroman/lmmlite/issues", "LazyData": "true", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-06-05 11:18:12 UTC", "RemoteUrl": "https://github.com/kbroman/lmmlite", "RemoteRef": "HEAD", "RemoteSha": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-03 09:01:19 UTC", "User": "root" }, "_user": "kbroman", "_type": "src", "_file": "lmmlite_0.2-2.tar.gz", "_fileid": "https://r2.ropensci.org/bbd8483f35eff940483cda38aca3de9570c96af4334958e293bf91edb8f53063", "_filesize": 490767, "_sha256": "bbd8483f35eff940483cda38aca3de9570c96af4334958e293bf91edb8f53063", "_expires": "2027-01-11T09:07:03.000Z", "_created": "2026-10-03T09:01:19.000Z", "_published": "2026-10-03T09:07:04.840Z", "_jobs": [ { "job": 111170625114, "time": 106, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11269179517" }, { "job": 111170625090, "time": 139, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11269428666" }, { "job": 111170625066, "time": 106, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11269464375" }, { "job": 111170625132, "time": 140, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11269653850" }, { "job": 111170625139, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11269728651" }, { "job": 111170625187, "time": 219, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11269504367" }, { "job": 111170625121, "time": 113, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11269968268" }, { "job": 111170625080, "time": 251, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11269544272" }, { "job": 111169990930, "time": 234, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11270077785" }, { "job": 111170625092, "time": 113, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11269314081" }, { "job": 111170625145, "time": 244, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11269219516" }, { "job": 111170625112, "time": 115, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11269828551" }, { "job": 111170625140, "time": 140, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11270175033" }, { "job": 111170625153, "time": 292, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11269514448" }, { "job": 111170625208, "time": 98, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11270102934" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799", "_status": "success", "_upstream": "https://github.com/kbroman/lmmlite", "_commit": { "id": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "Add r-universe badge and installation instructions\n", "time": 1780658292 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "stats", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.12", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-23", "n": 8 } ], "_tags": [], "_stars": 12, "_contributors": [ { "user": "kbroman", "count": 107, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "followers": 1483, "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lmmlite" }, "_devurl": "https://github.com/kbroman/lmmlite", "_searchresults": 12, "_topics": [ "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lmmlite.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_cranurl": false, "_exports": [ "calcLL", "eigen_rotation", "fitLMM", "getMLsoln" ], "_datasets": [ { "name": "recla", "title": "Example kinship, phenotype, and covariate data", "object": "recla", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "calcLL", "title": "Calculate log likelihood for a given heritability", "topics": [ "calcLL" ] }, { "page": "eigen_rotation", "title": "eigen decomposition + rotation", "topics": [ "eigen_rotation" ] }, { "page": "fitLMM", "title": "Fit a linear mixed model", "topics": [ "fitLMM" ] }, { "page": "getMLsoln", "title": "Get MLEs for coefficients and variance", "topics": [ "getMLsoln" ] }, { "page": "recla", "title": "Example kinship, phenotype, and covariate data", "topics": [ "recla" ] } ], "_readme": "https://github.com/kbroman/lmmlite/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "RcppEigen" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "lmmlite.Rmd", "filename": "lmmlite.html", "title": "R/lmmlite user guide", "engine": "knitr::rmarkdown", "headings": [], "created": "2015-11-24 05:42:28", "modified": "2026-06-01 17:27:36", "commits": 13 } ], "_score": 3.8573324964312685, "_indexed": true, "_nocasepkg": "lmmlite", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2-2", "date": "2026-10-03T09:03:13.000Z", "distro": "resolute", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/52b8248720a0a88ba4a2050f3d744f48e501a07f6fbae74663d0a5c292c07433", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.7.0", "os": "linux", "version": "0.2-2", "date": "2026-10-03T09:03:35.000Z", "distro": "resolute", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/9ddcd36c3ce36055b032f3611cf39d53824bfa34ddccb35e28e8a375fb805234", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "linux", "version": "0.2-2", "date": "2026-10-03T09:03:15.000Z", "distro": "resolute", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/8647d69e6feb41484e2749f40e8d57177782229ce4a4b0fd429382959629eace", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "linux", "version": "0.2-2", "date": "2026-10-03T09:03:36.000Z", "distro": "resolute", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/c80d3747f5fbbd931951e4f9f4ae28504345b7fa7a23dac0da1a84d9b010979f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.5.3", "os": "mac", "version": "0.2-2", "date": "2026-10-03T09:03:27.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/c95a21807153567f42e3e13c706b9c1b1df68671bc51f55daa9f63563ba79201", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.5.3", "os": "mac", "version": "0.2-2", "date": "2026-10-03T09:04:37.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/5f530b19bc434e2a236e7fc09e7982226cc336a41a6b4fe81f93f953e991f66d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "mac", "version": "0.2-2", "date": "2026-10-03T09:03:17.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/64d36d220b8f8eb290d2da598f83aa92cc6ef8cb6bec1882300e1301da59ede9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "mac", "version": "0.2-2", "date": "2026-10-03T09:04:54.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/6ab575abd063fca549340ca46411b13723cae19ec831820bb8a0e16106964a39", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.0", "os": "wasm", "version": "0.2-2", "date": "2026-10-03T09:03:31.000Z", "arch": "emscripten", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/09dca04fe7c8f90599b5793ca9818a8919b0c6612bb3b8b938b003302fc5bd07", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.7.0", "os": "win", "version": "0.2-2", "date": "2026-10-03T09:05:12.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/e9a32ef652d3de5cda5b48f07db1b9f77de1ab67b6002e7903e83215a4630aca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.7.0", "os": "win", "version": "0.2-2", "date": "2026-10-03T09:02:33.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/8651755c576bffbc138180d6480f00e96556d473592508584b682ccf775d67c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.5.3", "os": "win", "version": "0.2-2", "date": "2026-10-03T09:03:12.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/5a622fb0f8b662340b189a25ae0bbe95ebc4431d170182146ab9cdcf79c7507e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "win", "version": "0.2-2", "date": "2026-10-03T09:06:03.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/5a59098953ee2ee9bf0d9328ca2dddd1438008ffac62c913af701288f4d7f4cd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" }, { "r": "4.6.1", "os": "win", "version": "0.2-2", "date": "2026-10-03T09:02:35.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "https://r2.ropensci.org/7bbe450981a7c9acdd38bc1f0b0a06a84c34735f9a1ac88391f0ff9c88fe3587", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/37111429799" } ] }