{ "_id": "6a22b4940ef520ea2f58dba5", "Package": "lmmlite", "Version": "0.2-2", "Date": "2019-03-10", "Title": "Simple LMM Fitter for QTL Mapping", "Description": "A port of parts of 'pylmm' for fitting linear mixed models\nrelevant to genome-wide association studies (GWAS) and\nquantitative trait locus (QTL) mapping.", "Author": "Karl W Broman [aut, cre] (ORCID:\n, (closely following the\npylmm code by Nick Furlotte))", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\",\n\"(closely following the pylmm code by Nick Furlotte)\")))", "Maintainer": "Karl W Broman ", "License": "AGPL-3", "URL": "https://kbroman.org/lmmlite/, https://github.com/kbroman/lmmlite", "BugReports": "https://github.com/kbroman/lmmlite/issues", "LazyData": "true", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-06-05 11:18:12 UTC", "RemoteUrl": "https://github.com/kbroman/lmmlite", "RemoteRef": "HEAD", "RemoteSha": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-05 11:27:44 UTC", "User": "root" }, "MD5sum": "6e0f41261b03dbd112207ae4277359f0", "_user": "kbroman", "_type": "src", "_file": "lmmlite_0.2-2.tar.gz", "_fileid": "905947be3535656a5d2439e2ffec747287a3aa70bdeda8e7564b3955247e1d1f", "_filesize": 488657, "_sha256": "905947be3535656a5d2439e2ffec747287a3aa70bdeda8e7564b3955247e1d1f", "_created": "2026-06-05T11:27:44.000Z", "_published": "2026-06-05T11:35:48.306Z", "_distro": "noble", "_jobs": [ { "job": 79718294596, "time": 135, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7435467899" }, { "job": 79718294597, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7435472264" }, { "job": 79718294541, "time": 140, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7435468944" }, { "job": 79718294537, "time": 146, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7435469926" }, { "job": 79718294618, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7435485712" }, { "job": 79718294564, "time": 424, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7435551984" }, { "job": 79718294565, "time": 93, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7435464284" }, { "job": 79718294587, "time": 327, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7435542197" }, { "job": 79717795386, "time": 209, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7435428419" }, { "job": 79718294511, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7435464208" }, { "job": 79718294539, "time": 206, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7435486311" }, { "job": 79718294551, "time": 124, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7435463777" }, { "job": 79718294544, "time": 116, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7435461483" } ], "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/kbroman/lmmlite", "_commit": { "id": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "Add r-universe badge and installation instructions\n", "time": 1780658292 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "stats", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.12", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-39", "n": 1 }, { "week": "2026-23", "n": 8 } ], "_tags": [], "_stars": 11, "_contributors": [ { "user": "kbroman", "count": 107, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lmmlite" }, "_devurl": "https://github.com/kbroman/lmmlite", "_searchresults": 12, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lmmlite.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "calcLL", "eigen_rotation", "fitLMM", "getMLsoln" ], "_datasets": [ { "name": "recla", "title": "Example kinship, phenotype, and covariate data", "object": "recla", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "calcLL", "title": "Calculate log likelihood for a given heritability", "topics": [ "calcLL" ] }, { "page": "eigen_rotation", "title": "eigen decomposition + rotation", "topics": [ "eigen_rotation" ] }, { "page": "fitLMM", "title": "Fit a linear mixed model", "topics": [ "fitLMM" ] }, { "page": "getMLsoln", "title": "Get MLEs for coefficients and variance", "topics": [ "getMLsoln" ] }, { "page": "recla", "title": "Example kinship, phenotype, and covariate data", "topics": [ "recla" ] } ], "_readme": "https://github.com/kbroman/lmmlite/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "RcppEigen" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "lmmlite.Rmd", "filename": "lmmlite.html", "title": "R/lmmlite user guide", "engine": "knitr::rmarkdown", "headings": [], "created": "2015-11-24 05:42:28", "modified": "2026-06-01 17:27:36", "commits": 13 } ], "_score": 4.12057393120585, "_indexed": true, "_nocasepkg": "lmmlite", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2-2", "date": "2026-06-05T11:30:03.000Z", "distro": "noble", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "4511ae65677cccc8ba838918608e8df2dc46de047c74f8f0f4244a4a0798832a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.7.0", "os": "linux", "version": "0.2-2", "date": "2026-06-05T11:30:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "c4602b05719253d097e7b03d8ada1e6ad3009ffe87b964b84951fbc878fca5d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "linux", "version": "0.2-2", "date": "2026-06-05T11:30:05.000Z", "distro": "noble", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "d0c8b30ac1c9861c277d8b480e8b249b97769a735a22d2303e7be80480c1951e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "linux", "version": "0.2-2", "date": "2026-06-05T11:30:05.000Z", "distro": "noble", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "3665d0fbeac55f1156e8d310a733de1d7d946b3e09b7914f577d325661f3b6b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.5.3", "os": "mac", "version": "0.2-2", "date": "2026-06-05T11:31:04.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "d77241c41b5abffcc6a6e7d3f9c619085a94733e18b66fd5e6c0deb29fc2831b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.5.3", "os": "mac", "version": "0.2-2", "date": "2026-06-05T11:33:29.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "25d0fe6318923436da1f8759af02aac1b485170bb543c44589f8fea62d4e43b4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "mac", "version": "0.2-2", "date": "2026-06-05T11:29:54.000Z", "arch": "aarch64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "1b7adf30d0ddeed3048e44bfb42422fd92afe80b2d810d7fbdea937a0fd55711", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "mac", "version": "0.2-2", "date": "2026-06-05T11:33:34.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "4b67d2cfb736f6671e7a004ee53c62f69c966e53e3669f6b22e34422c7e7221f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "wasm", "version": "0.2-2", "date": "2026-06-05T11:30:05.000Z", "arch": "emscripten", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "d15ac8d2a9ca8cba733891fa141d7cd8fe585df604cbc4b8a57956975f21152e", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.7.0", "os": "win", "version": "0.2-2", "date": "2026-06-05T11:30:18.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "07220676ff071a8fc5837dd15c5557c4764ce2440786b8f36175e307a7ead0b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.5.3", "os": "win", "version": "0.2-2", "date": "2026-06-05T11:29:08.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "f6628f725b49bb02c0194b41bfb6d657a9a4a5d9406eff6fb16a21ef5d175892", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" }, { "r": "4.6.0", "os": "win", "version": "0.2-2", "date": "2026-06-05T11:29:08.000Z", "arch": "x86_64", "commit": "147b3d3f751abf31f5e7c1b4f534a4394a535dc6", "fileid": "f90a58a41836506baf2471bf2391744102e65554f1143e5f9795d9c826028868", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/27012045743" } ] }