{ "_id": "6ad32eb26814ce853b658488", "Package": "mbmixture", "Version": "0.8", "Date": "2026-07-19", "Title": "Microbiome Mixture Analysis", "Description": "Evaluate whether a microbiome sample is a mixture of two\nsamples, by fitting a model for the number of read counts as a\nfunction of single nucleotide polymorphism (SNP) allele and the\ngenotypes of two potential source samples. Lobo et al. (2021)\n.", "Author": "Karl W Broman [aut, cre]\n()", "Maintainer": "Karl W Broman ", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")))", "License": "MIT + file LICENSE", "URL": "https://github.com/kbroman/mbmixture", "BugReports": "https://github.com/kbroman/mbmixture/issues", "VignetteBuilder": "knitr", "LazyData": "true", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-07-19 11:02:21 UTC", "RemoteUrl": "https://github.com/kbroman/mbmixture", "RemoteRef": "HEAD", "RemoteSha": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-17 08:12:41 UTC", "User": "root" }, "_user": "kbroman", "_type": "src", "_file": "mbmixture_0.8.tar.gz", "_fileid": "https://r2.ropensci.org/5ad505add9678e56b81ed1829faba8e0bf1d5c29ca6a47b06150d897ac5831af", "_filesize": 115415, "_sha256": "5ad505add9678e56b81ed1829faba8e0bf1d5c29ca6a47b06150d897ac5831af", "_expires": "2027-01-25T08:15:44.000Z", "_created": "2026-10-17T08:12:41.000Z", "_published": "2026-10-17T08:15:46.357Z", "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117349663457, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12094643946" }, { "job": 117349663488, "time": 114, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12094234418" }, { "job": 117349663456, "time": 146, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12094599487" }, { "job": 117349663418, "time": 94, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12095520010" }, { "job": 117349027420, "time": 203, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12095151144" }, { "job": 117349663432, "time": 91, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12094842984" }, { "job": 117349663454, "time": 54, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12095121168" }, { "job": 117349663486, "time": 78, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12095251734" }, { "job": 117349663453, "time": 78, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12094564515" } ], "_upstream": "https://github.com/kbroman/mbmixture", "_commit": { "id": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "update years in license\n", "time": 1784458941 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 1 }, { "week": "2026-22", "n": 2 }, { "week": "2026-23", "n": 1 }, { "week": "2026-24", "n": 1 }, { "week": "2026-25", "n": 1 }, { "week": "2026-26", "n": 1 }, { "week": "2026-27", "n": 3 }, { "week": "2026-29", "n": 3 } ], "_tags": [ { "name": "0.8", "date": "2026-07-19" } ], "_stars": 5, "_contributors": [ { "user": "kbroman", "count": 60, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "followers": 1485, "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 302, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mbmixture" }, "_devurl": "https://github.com/kbroman/mbmixture", "_searchresults": 6, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/mbmixture.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/kbroman/mbmixture", "_realowner": "kbroman", "_cranurl": true, "_releases": [ { "version": "0.2-5", "date": "2020-10-22" }, { "version": "0.4", "date": "2023-04-27" }, { "version": "0.6", "date": "2024-11-27" }, { "version": "0.8", "date": "2026-07-19" } ], "_exports": [ "bootstrapNull", "bootstrapSE", "mbmix_loglik", "mle_e", "mle_p", "mle_pe" ], "_datasets": [ { "name": "mbmixdata", "title": "Example dataset for mbmixture package", "object": "mbmixdata", "class": [ "array" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "bootstrapNull", "title": "Bootstrap to assess significance", "topics": [ "bootstrapNull" ] }, { "page": "bootstrapSE", "title": "Bootstrap to get standard errors", "topics": [ "bootstrapSE" ] }, { "page": "mbmix_loglik", "title": "log likelihood function for microbiome mixture", "topics": [ "mbmix_loglik" ] }, { "page": "mbmixdata", "title": "Example dataset for mbmixture package", "topics": [ "mbmixdata" ] }, { "page": "mle_e", "title": "MLE of e for fixed p", "topics": [ "mle_e" ] }, { "page": "mle_p", "title": "MLE of p for fixed e", "topics": [ "mle_p" ] }, { "page": "mle_pe", "title": "Find MLEs for microbiome mixture", "topics": [ "mle_pe" ] } ], "_readme": "https://github.com/kbroman/mbmixture/raw/HEAD/README.md", "_rundeps": [ "numDeriv" ], "_vignettes": [ { "source": "mbmixture.Rmd", "filename": "mbmixture.html", "title": "R/mbmixture User Guide", "engine": "knitr::rmarkdown", "headings": [], "created": "2018-08-11 14:28:33", "modified": "2026-07-05 12:44:06", "commits": 9 } ], "_score": 5.301029995663981, "_indexed": true, "_nocasepkg": "mbmixture", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8", "date": "2026-10-17T08:14:50.000Z", "distro": "resolute", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/a7541f1003b9d67853a8526b255fe42bba77cb65e5a8928712b6f5037b38dbbb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.6.1", "os": "linux", "version": "0.8", "date": "2026-10-17T08:14:40.000Z", "distro": "resolute", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/fd8925546cb95cf1cbc3a117916896ec60d0290ecaacb54f81f094fcac7cf646", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.5.3", "os": "mac", "version": "0.8", "date": "2026-10-17T08:15:05.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/1b0457aa5c57749c593921c03572bc4556d494ea93d2166870738cf6d885c140", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.6.1", "os": "mac", "version": "0.8", "date": "2026-10-17T08:14:28.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/f5d0e82089bddd0d911e37bb1f6f43c320cfaf65825718fa2ce4e14feb16fe86", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.6.0", "os": "wasm", "version": "0.8", "date": "2026-10-17T08:14:29.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/060e855a3a2cab4daa40935bc37aa96098f5989c5452388db9b33f49816b48ca", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.7.0", "os": "win", "version": "0.8", "date": "2026-10-17T08:13:39.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/450783a47ee9c178e91a3d8dbaf960b2736cd1033ac6768c37661f82b435f827", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.5.3", "os": "win", "version": "0.8", "date": "2026-10-17T08:13:55.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/0124473f85e7247462246c616c3c172a65484753bb97814e8ffb5ba41c38db46", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" }, { "r": "4.6.1", "os": "win", "version": "0.8", "date": "2026-10-17T08:13:55.000Z", "commit": "f4e4416d663bd04508b6bca8cdddc9134b555a29", "fileid": "https://r2.ropensci.org/47f89797c694d9d63092a7efb0c9ab0fd397d752608acfc7d799e3770dfe4380", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/39016290300" } ] }