{ "_id": "6a1df3861d7bb097a0a5973f", "Package": "mbmixture", "Version": "0.6", "Date": "2024-11-27", "Title": "Microbiome Mixture Analysis", "Description": "Evaluate whether a microbiome sample is a mixture of two\nsamples, by fitting a model for the number of read counts as a\nfunction of single nucleotide polymorphism (SNP) allele and the\ngenotypes of two potential source samples. Lobo et al. (2021)\n.", "Author": "Karl W Broman [aut, cre]\n()", "Maintainer": "Karl W Broman ", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")))", "License": "MIT + file LICENSE", "URL": "https://github.com/kbroman/mbmixture", "BugReports": "https://github.com/kbroman/mbmixture/issues", "VignetteBuilder": "knitr", "LazyData": "true", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-06-01 16:40:23 UTC", "RemoteUrl": "https://github.com/kbroman/mbmixture", "RemoteRef": "HEAD", "RemoteSha": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 21:00:04 UTC", "User": "root" }, "MD5sum": "c8d205628a8bbd0558b11aca8e0e9bb0", "_user": "kbroman", "_type": "src", "_file": "mbmixture_0.6.tar.gz", "_fileid": "efdeb61c23ed1da4d853d68c1f9ebbe635e7780fc033270bcb767f0cecf01839", "_filesize": 116724, "_sha256": "efdeb61c23ed1da4d853d68c1f9ebbe635e7780fc033270bcb767f0cecf01839", "_created": "2026-06-01T21:00:04.000Z", "_published": "2026-06-01T21:03:02.228Z", "_distro": "noble", "_jobs": [ { "job": 78947607458, "time": 135, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7342877270" }, { "job": 78947607394, "time": 135, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7342877504" }, { "job": 78947607431, "time": 125, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7342873527" }, { "job": 78947607439, "time": 94, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7342862456" }, { "job": 78947004958, "time": 204, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7342827830" }, { "job": 78947607408, "time": 140, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7342879180" }, { "job": 78947607485, "time": 118, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7342870846" }, { "job": 78947607421, "time": 88, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7342860944" }, { "job": 78947607450, "time": 82, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7342858482" } ], "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/kbroman/mbmixture", "_commit": { "id": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "Add mbmixture-package.Rd\n", "time": 1780332023 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 1 }, { "week": "2026-22", "n": 2 }, { "week": "2026-23", "n": 1 } ], "_tags": [], "_stars": 5, "_contributors": [ { "user": "kbroman", "count": 51, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 127, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mbmixture" }, "_devurl": "https://github.com/kbroman/mbmixture", "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mbmixture.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/kbroman/mbmixture", "_realowner": "kbroman", "_cranurl": true, "_releases": [ { "version": "0.2-5", "date": "2020-10-22" }, { "version": "0.4", "date": "2023-04-27" }, { "version": "0.6", "date": "2024-11-27" } ], "_exports": [ "bootstrapNull", "bootstrapSE", "mbmix_loglik", "mle_e", "mle_p", "mle_pe" ], "_datasets": [ { "name": "mbmixdata", "title": "Example dataset for mbmixture package", "object": "mbmixdata", "class": [ "array" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "bootstrapNull", "title": "Bootstrap to assess significance", "topics": [ "bootstrapNull" ] }, { "page": "bootstrapSE", "title": "Bootstrap to get standard errors", "topics": [ "bootstrapSE" ] }, { "page": "mbmix_loglik", "title": "log likelihood function for microbiome mixture", "topics": [ "mbmix_loglik" ] }, { "page": "mbmixdata", "title": "Example dataset for mbmixture package", "topics": [ "mbmixdata" ] }, { "page": "mle_e", "title": "MLE of e for fixed p", "topics": [ "mle_e" ] }, { "page": "mle_p", "title": "MLE of p for fixed e", "topics": [ "mle_p" ] }, { "page": "mle_pe", "title": "Find MLEs for microbiome mixture", "topics": [ "mle_pe" ] } ], "_readme": "https://github.com/kbroman/mbmixture/raw/HEAD/README.md", "_rundeps": [ "numDeriv" ], "_vignettes": [ { "source": "mbmixture.Rmd", "filename": "mbmixture.html", "title": "R/mbmixture User Guide", "engine": "knitr::rmarkdown", "headings": [], "created": "2018-08-11 14:28:33", "modified": "2026-05-28 11:01:33", "commits": 7 } ], "_score": 4.8750612633917, "_indexed": true, "_nocasepkg": "mbmixture", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.6", "date": "2026-06-01T21:02:22.000Z", "distro": "noble", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "871eac8864b7e78e27975a6696d1bd92f27d100884ee763755e2b46bbc1c144f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.6.0", "os": "linux", "version": "0.6", "date": "2026-06-01T21:02:26.000Z", "distro": "noble", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "f570d64f706fc331fd42630fff29fe7b8160203ff91b00369fc7505aa2692a16", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.5.3", "os": "mac", "version": "0.6", "date": "2026-06-01T21:02:12.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "ba6d45de2628c94971ca8938359fef239fbf3028a0afc92949d3951dbdaa697f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.6.0", "os": "mac", "version": "0.6", "date": "2026-06-01T21:01:45.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "2d4b05b8e2ad1b8dc880a5dc04a8e1557c3bed88ed98b63d99269989dbdce2c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.6.0", "os": "wasm", "version": "0.6", "date": "2026-06-01T21:02:43.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "3fee38f5a2065284a95a6e44c3cdd2d00013ef9adf2bdc536e1cab5df339a76e", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.7.0", "os": "win", "version": "0.6", "date": "2026-06-01T21:01:57.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "ca2920bd0a8870eeb9b0fbea2317b20cff13236053bb734685f711e4166505ed", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.5.3", "os": "win", "version": "0.6", "date": "2026-06-01T21:01:33.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "03880653b5615130143ba68db90cf9b87c7d9903922df852dc825f169a298aeb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" }, { "r": "4.6.0", "os": "win", "version": "0.6", "date": "2026-06-01T21:01:27.000Z", "commit": "71ac82566c5b76f2f96359a6a3ed32a069f67cff", "fileid": "17fdd8b31ed228a0baad2e6c7be11cb62f478c8c96fc8f4d999ac5582de87630", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/26781570775" } ] }