{ "_id": "6a4a5bd31e9cffeb4b833586", "Package": "mbmixture", "Version": "0.7-1", "Date": "2026-06-30", "Title": "Microbiome Mixture Analysis", "Description": "Evaluate whether a microbiome sample is a mixture of two\nsamples, by fitting a model for the number of read counts as a\nfunction of single nucleotide polymorphism (SNP) allele and the\ngenotypes of two potential source samples. Lobo et al. (2021)\n.", "Author": "Karl W Broman [aut, cre]\n()", "Maintainer": "Karl W Broman ", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")))", "License": "MIT + file LICENSE", "URL": "https://github.com/kbroman/mbmixture", "BugReports": "https://github.com/kbroman/mbmixture/issues", "VignetteBuilder": "knitr", "LazyData": "true", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.0.0", "Repository": "https://kbroman.r-universe.dev", "Date/Publication": "2026-07-05 12:44:06 UTC", "RemoteUrl": "https://github.com/kbroman/mbmixture", "RemoteRef": "HEAD", "RemoteSha": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-05 13:24:30 UTC", "User": "root" }, "_user": "kbroman", "_type": "src", "_file": "mbmixture_0.7-1.tar.gz", "_fileid": "https://r2.ropensci.org/255c6b55caefb0bbf6120b375b8268d1f3e2490ce3c7bb507d8819118359aa53", "_filesize": 116495, "_sha256": "255c6b55caefb0bbf6120b375b8268d1f3e2490ce3c7bb507d8819118359aa53", "_expires": "2026-10-13T13:27:45.000Z", "_created": "2026-07-05T13:24:30.000Z", "_published": "2026-07-05T13:27:46.953Z", "_jobs": [ { "job": 85227056103, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8092224278" }, { "job": 85227056102, "time": 138, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8092223721" }, { "job": 85227056126, "time": 76, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8092216007" }, { "job": 85227056104, "time": 88, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8092217727" }, { "job": 85226817790, "time": 193, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8092206595" }, { "job": 85227056111, "time": 150, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8092225245" }, { "job": 85227056117, "time": 73, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8092215717" }, { "job": 85227056144, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8092215841" }, { "job": 85227056125, "time": 78, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8092216269" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794", "_status": "success", "_upstream": "https://github.com/kbroman/mbmixture", "_commit": { "id": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "avoiding pasting badges into vignette\n", "time": 1783255446 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "kbroman", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 1 }, { "week": "2026-22", "n": 2 }, { "week": "2026-23", "n": 1 }, { "week": "2026-24", "n": 1 }, { "week": "2026-25", "n": 1 }, { "week": "2026-26", "n": 1 }, { "week": "2026-27", "n": 3 } ], "_tags": [], "_stars": 5, "_contributors": [ { "user": "kbroman", "count": 57, "uuid": 53972 } ], "_userbio": { "uuid": 53972, "type": "user", "name": "Karl Broman", "followers": 1478, "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\r\n" }, "_downloads": { "count": 263, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mbmixture" }, "_devurl": "https://github.com/kbroman/mbmixture", "_searchresults": 8, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mbmixture.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/kbroman/mbmixture", "_realowner": "kbroman", "_cranurl": true, "_releases": [ { "version": "0.2-5", "date": "2020-10-22" }, { "version": "0.4", "date": "2023-04-27" }, { "version": "0.6", "date": "2024-11-27" } ], "_exports": [ "bootstrapNull", "bootstrapSE", "mbmix_loglik", "mle_e", "mle_p", "mle_pe" ], "_datasets": [ { "name": "mbmixdata", "title": "Example dataset for mbmixture package", "object": "mbmixdata", "class": [ "array" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "bootstrapNull", "title": "Bootstrap to assess significance", "topics": [ "bootstrapNull" ] }, { "page": "bootstrapSE", "title": "Bootstrap to get standard errors", "topics": [ "bootstrapSE" ] }, { "page": "mbmix_loglik", "title": "log likelihood function for microbiome mixture", "topics": [ "mbmix_loglik" ] }, { "page": "mbmixdata", "title": "Example dataset for mbmixture package", "topics": [ "mbmixdata" ] }, { "page": "mle_e", "title": "MLE of e for fixed p", "topics": [ "mle_e" ] }, { "page": "mle_p", "title": "MLE of p for fixed e", "topics": [ "mle_p" ] }, { "page": "mle_pe", "title": "Find MLEs for microbiome mixture", "topics": [ "mle_pe" ] } ], "_readme": "https://github.com/kbroman/mbmixture/raw/HEAD/README.md", "_rundeps": [ "numDeriv" ], "_vignettes": [ { "source": "mbmixture.Rmd", "filename": "mbmixture.html", "title": "R/mbmixture User Guide", "engine": "knitr::rmarkdown", "headings": [], "created": "2018-08-11 14:28:33", "modified": "2026-07-05 12:44:06", "commits": 9 } ], "_score": 5.243038048686294, "_indexed": true, "_nocasepkg": "mbmixture", "_universes": [ "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.7-1", "date": "2026-07-05T13:26:53.000Z", "distro": "resolute", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/2238a1c4519c99be0f9cb4836eec3876923d9d0f48c1d36c36333b91a90d8ea7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.6.1", "os": "linux", "version": "0.7-1", "date": "2026-07-05T13:26:48.000Z", "distro": "resolute", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/a151136c9059e5dc4296f4e19891be49c4839734829868386fdccc6e739742d2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.5.3", "os": "mac", "version": "0.7-1", "date": "2026-07-05T13:25:53.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/af3158cb37ec7f832c93c1ffe69621cdfb871c942c701d70d95a14fc5d69b145", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.6.1", "os": "mac", "version": "0.7-1", "date": "2026-07-05T13:26:02.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/f883a78c5388f9c53ec34e594dfa964399fe424c07d271c8bd36213f31dd2d7b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.6.0", "os": "wasm", "version": "0.7-1", "date": "2026-07-05T13:27:16.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/aba440f3b360040b8d1a32727b93550f09c768545515dc82f91b715d066a0fef", "status": "success", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.7.0", "os": "win", "version": "0.7-1", "date": "2026-07-05T13:25:40.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/d3de7968c0466642db47db651225176309a8e7a6a2bc0320b08d9f679378a890", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.5.3", "os": "win", "version": "0.7-1", "date": "2026-07-05T13:25:41.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/bda79abd6b6474c873d5839a1fb6ab64bb56786efb17ba5c382e8fcff85d17cb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" }, { "r": "4.6.1", "os": "win", "version": "0.7-1", "date": "2026-07-05T13:25:45.000Z", "commit": "b30124dd96bf7ba147a9bb4587c6357556b4b0c2", "fileid": "https://r2.ropensci.org/0044107a431113d16249362e7f1264a7f19b7bf8a57ba1200e659eb4f8f41837", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kbroman/actions/runs/28742179794" } ] }