NEWS

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lineup 2026-07-15

• Added package logo

• For parallel computing, use of n.cores=0 argument now results in all but one core (parallel::detectCores()-1) rather than all cores.

lineup 2024-07-15

• Fixed link in documentation

lineup 2023-02-19

• Revise CITATION file to use bibentry() rather than citEntry()

lineup 2022-07-10

• Include <limits.h> in a C file, for an upcoming change in R

lineup 2021-11-03

• Fixed lineupversion() to handle a case like "0.40".

lineup 2020-11-16

• Fixed use of class(), for example using inherits(object, "blah") rather than "blah" %in% class(object).

• Fixed potential problem in documentation, since plot() has moved from the graphics package to base.

• Converted documentation to use markdown

lineup 2019-03-06

• Fixed a bug in distee()

• Fixed test for corbetw2mat(), due to upcoming change in sample(), in R 3.6

lineup 2018-03-23

• Add ByteCompile to the DESCRIPTION file

lineup 2017-05-19

• Small changes to avoid Note about "R_registerRoutines"

lineup 2015-07-20

• Add a vignette and example data.

• calc.locallod can do calculations in parallel

lineup 2014-05-02

• Convert documentation to use roxygen2

lineup 2012-10-25

• Only minor changes

lineup 2012-10-15

• In plot2dist, make default smoothScatter=FALSE

lineup 2012-08-14

• Added function combinedist, for combining distance matrices

lineup 2012-08-08

• Added addcovar and intcovar arguments to calc.locallod.

lineup 2012-03-02

• Added NAMESPACE.

• Revised lineupversion() to use packageVersion().

lineup 2011-05-11

• This is a new package to contain tools for lining up two data matrices, to detect and correct sample mix-ups. The key examples are gene expression microarray data on a large set of samples on two tissues, or between genotype and gene expression.