Package: lineup2 0.6
lineup2: Lining Up Two Sets of Measurements
Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues. This is a revised version of the 'lineup' package, to be more general and not tied to the 'qtl' package.
Authors:
lineup2_0.6.tar.gz
lineup2_0.6.zip(r-4.5)lineup2_0.6.zip(r-4.4)lineup2_0.6.zip(r-4.3)
lineup2_0.6.tgz(r-4.4-x86_64)lineup2_0.6.tgz(r-4.4-arm64)lineup2_0.6.tgz(r-4.3-x86_64)lineup2_0.6.tgz(r-4.3-arm64)
lineup2_0.6.tar.gz(r-4.5-noble)lineup2_0.6.tar.gz(r-4.4-noble)
lineup2_0.6.tgz(r-4.4-emscripten)lineup2_0.6.tgz(r-4.3-emscripten)
lineup2.pdf |lineup2.html✨
lineup2/json (API)
NEWS
| # Install 'lineup2' in R: |
| install.packages('lineup2', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kbroman/lineup2/issues
- lineup2ex - Example dataset for lineup2 package
Last updated 2 years agofrom:83d36e0e0b. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win-x86_64 | OK | Nov 14 2024 |
| R-4.5-linux-x86_64 | OK | Nov 14 2024 |
| R-4.4-win-x86_64 | OK | Nov 14 2024 |
| R-4.4-mac-x86_64 | OK | Nov 14 2024 |
| R-4.4-mac-aarch64 | OK | Nov 14 2024 |
| R-4.3-win-x86_64 | OK | Nov 14 2024 |
| R-4.3-mac-x86_64 | OK | Nov 14 2024 |
| R-4.3-mac-aarch64 | OK | Nov 14 2024 |
Exports:align_matrix_colsalign_matrix_rowscorr_betw_matricesdist_betw_arraysdist_betw_matricesget_2ndbestget_bestget_nonselfget_problemsget_selfhist_self_nonselfplot_samplewhich_2ndbestwhich_best
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Align the columns of two matrices | align_matrix_cols |
| Align the rows of two matrices | align_matrix_rows |
| Calculate correlations between columns of two matrices | corr_betw_matrices |
| Distance between rows of two arrays | dist_betw_arrays |
| Distance between rows of two matrices | dist_betw_matrices |
| Get 2nd-smallest distance for each individual | get_2ndbest |
| Get smallest distance for each individual | get_best |
| Get self-nonself distances | get_nonself |
| Summarize potential problems in a distance matrix | get_problems |
| Get self-self distance | get_self |
| Plot histograms of self-self and self-nonself distances | hist_self_nonself |
| Example dataset for lineup2 package | lineup2ex |
| Plot the distances for a given sample | plot_sample |
| Determine which individual has 2nd-smallest distance to each individual | which_2ndbest |
| Determine which individual has smallest distance to each individual | which_best |
