Package: qtlsim 0.73-6
qtlsim: Software for Testing QTL Analysis via Simulations
Software for testing QTL analysis via simulations.
Authors:
qtlsim_0.73-6.tar.gz
qtlsim_0.73-6.zip(r-4.7)qtlsim_0.73-6.zip(r-4.6)qtlsim_0.73-6.zip(r-4.5)
qtlsim_0.73-6.tgz(r-4.6-x86_64)qtlsim_0.73-6.tgz(r-4.6-arm64)qtlsim_0.73-6.tgz(r-4.5-x86_64)qtlsim_0.73-6.tgz(r-4.5-arm64)
qtlsim_0.73-6.tar.gz(r-4.7-arm64)qtlsim_0.73-6.tar.gz(r-4.7-x86_64)qtlsim_0.73-6.tar.gz(r-4.6-arm64)qtlsim_0.73-6.tar.gz(r-4.6-x86_64)
qtlsim_0.73-6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
qtlsim/json (API)
NEWS
| # Install 'qtlsim' in R: |
| install.packages('qtlsim', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kbroman/qtlsim/issues
Last updated from:55e7f1ec7a. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 97 | ||
| linux-devel-x86_64 | OK | 89 | ||
| source / vignettes | OK | 179 | ||
| linux-release-arm64 | OK | 101 | ||
| linux-release-x86_64 | OK | 80 | ||
| macos-release-arm64 | OK | 94 | ||
| macos-release-x86_64 | OK | 176 | ||
| macos-oldrel-arm64 | OK | 96 | ||
| macos-oldrel-x86_64 | OK | 147 | ||
| windows-devel | OK | 69 | ||
| windows-release | OK | 119 | ||
| windows-oldrel | OK | 74 | ||
| wasm-release | OK | 91 |
Exports:anal.allanal.leapsanal.mcmcanal.multianal.multi2combine.mcmccombine.simsconvertOutputconvertSimpermplot_ressim.mcmcsim.nullsimbcwhich.correctwhich.correct.subwhich.pos
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analyze a backcross | anal.all |
| Analyze a backcross by model selection methods | anal.leaps |
| Analyze a backcross by MCMC | anal.mcmc |
| Simulations to test QTL analyses | anal.multi |
| Simulations to test QTL analyses | anal.multi2 |
| Combine multiple simulation results | combine.mcmc |
| Combine multiple simulation results | combine.sims |
| Convert output of anal.leaps, anal.mcmc or perm | convertOutput |
| Convert simulated data into form for R/qtl | convertSim |
| Forward selection w/ permutation test | perm |
| Plot simulation results | plot_res |
| Simulations to test QTL analyses | sim.mcmc |
| Simulate under the null hypothesis of no QTLs. | sim.null |
| Simulate a backcross | simbc |
| Determine which QTLs were correctly identified in an analysis | which.correct |
