NEWS

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xoiGBS 0.1.8 (2026-03-12)

• Add function inferXOloc() to infer crossover locations from genotype probabilities.

• Add function trimXO() for trimming tight double-crossovers from the output of inferXOloc().

• Add function randXOloc() for randomizing the estimated crossover locations, uniform within their intervals.

• Add functions grabXO() and grab2XO() for grabbing all crossover locations and all pairs of crossovers, when there are exactly two.

xoiGBS 0.1.7 (2025-12-12)

• Revise sort_ids() and order_ids() to handle IDs with _dup at the end.

xoiGBS 0.1.5 (2025-11-10)

• Added calc_genoprob_gbs to calculate genotype probabilities from genotyping-by-sequencing (GBS) data (counts of alleles at SNPs) for a backcross.

xoiGBS 0.1.3 (2025-03-05)

• A new package, to analyze recombination and crossover interference from genotyping-by-sequencing (GBS) data on a backcross.