Package: broman 0.98

broman: Karl Broman's R Code

Miscellaneous R functions, including functions related to graphics (mostly for base graphics), permutation tests, running mean/median, and general utilities.

Authors:Karl W Broman [aut, cre], Aimee Teo Broman [ctb]

broman_0.98.tar.gz
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broman_0.98.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
broman/json (API)

# Install 'broman' in R:

install.packages('broman', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/broman/issues

Datasets:

numbers - Numbers spelled out in English
Numbers - Numbers spelled out in English

On CRAN:

9.83 score 183 stars 5 packages 578 scripts 3.0k downloads 2 mentions 80 exports 17 dependencies

Last updated from:05b8f51949. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	151
linux-devel-x86_64	OK	133
source / vignettes	OK	199
linux-release-arm64	OK	99
linux-release-x86_64	OK	158
macos-release-arm64	OK	113
macos-release-x86_64	OK	279
macos-oldrel-arm64	OK	107
macos-oldrel-x86_64	OK	295
windows-devel-arm64	OK	179
windows-devel-x86_64	OK	153
windows-release-arm64	OK	194
windows-release-x86_64	OK	110
windows-oldrel-x86_64	OK	105
wasm-release	OK	115

Exports:%nin%%win%%wnin%add_commas align_vectors arrowlocator attrnames brocolors bromanversion cf chisq ciplot colwalpha compare_rows convert2hex crayons dec2hex dotplot excel_fig exit fac2num fisher get_precision grayplot grayplot_na h hex2dec histlines jiggle karl_theme kbdate lenuniq make manyboxplot maxabs mypairs myround normalize objectsizes openfile paired.perm.test paste.paste..paste.0 paste0.paste00 perm.test pick_more_precise plot_crayons qqline2 qr2 quantileSE revgray revrainbow rmvn runningmean runningratio runningratio2 setRNGparallel simp spell_out strwidth2lines strwidth2xlim switchv theme_karl time_axis timeplot trap triarrow trigrid trilines triplot tripoints tritext twocolorpal unsetRNGparallel vec2string venn winsorize xlimlabel

Dependencies:cli cpp11 farver ggplot2 glue gtable isoband labeling lifecycle R6 RColorBrewer rlang S7 scales vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Value matching	%nin% %win% %wnin%
Add commas to a large number	add_commas
Align two vectors	align_vectors
Use the locator function to plot an arrow	arrowlocator
Get names of attributes	attrnames
Vectors of colors for figures	brocolors
Installed version of R/broman	bromanversion
Compare objects, including missing data pattern	cf cf.default cf.list
Chi-square test by simulation for a two-way table	chisq
Effect plot with multiple CIs for different groups	ciplot
Convert a color to use alpha transparency	colwalpha
Compare rows in a matrix	compare_rows
Convert decimal to hex	convert2hex dec2hex
Crayon colors	crayons
Dot chart with a gray background	dotplot
Excel-style figure displaying contents of a matrix	excel_fig
exit R without saving	exit
Convert a factor to numeric	fac2num
Fisher's exact test for a two-way table	fisher
Determine the precision of a number	get_precision
Scatterplot with a gray background	grayplot
Scatterplot with missing values indicated	grayplot_na
View html version of help file	h
Convert from hex to decimal	hex2dec
Utility to create line-based histogram	histlines
Jiggle points horizontally	jiggle
My little date facility	kbdate
Number of unique values	lenuniq
Run make within a package directory	make
Boxplot-like figure for many groups	manyboxplot
maximum of absolute value	maxabs
My scatterplot matrix	mypairs
Round a number, preserving extra 0's	myround
Quantile normalization	normalize
Numbers spelled out in English	Numbers numbers
Calculate sizes of all objects in workspace	objectsizes
Open a file	openfile
Paired permutation t-test	paired.perm.test
paste with dot separator	paste.
paste with null or dot as separator and with collapse	paste.. paste.0 paste0. paste00
Permutation t-test	perm.test
Pick the more precise value for each element in two related vectors	pick_more_precise
Illustration of crayon colors	plot_crayons
qqline for qqplot	qqline2
The QR decomposition of a matrix	qr2
Sample quantiles and their standard errors	quantileSE
Create vector of colors from white to black	revgray
Create vector of colors from blue to red	revrainbow
Simulate multivariate normal	rmvn
Running mean, sum, or median	runningmean
Running ratio	runningratio
Running ratio with adaptive window	runningratio2
Set up random number generation for parallel calculations	setRNGparallel unsetRNGparallel
Numerical integration	simp trap
Spell out an integer	spell_out
Calculate width of a character string in number of lines	strwidth2lines
Calculate horizontal limit in user coordinates for adding labels	strwidth2xlim
Vectorized version of switch	switchv
Karl's ggplot2 theme	karl_theme theme_karl
Set up a time-based axis	time_axis
Scatterplot with date/times on the x-axis	timeplot
Plot an arrow within a ternary plot	triarrow
Add grid lines to triplot	trigrid
Plot lines within a ternary plot	trilines
Plot ternary diagram (triangle plot)	triplot
Plot points within a ternary plot	tripoints
Plot text within a ternary plot	tritext
Create vector of colors from blue to white to red	twocolorpal
Turn a vector into a single character string	vec2string
Plot to-scale Venn diagram	venn
Winsorize a vector	winsorize
Calulate horizontal limit in user coordinates for adding labels	xlimlabel