Package: fingers 0.60-6
fingers: Identifying Clusters of Related Individuals
Identifying clusters of related individuals.
Authors:
fingers_0.60-6.tar.gz
fingers_0.60-6.zip(r-4.7)fingers_0.60-6.zip(r-4.6)fingers_0.60-6.zip(r-4.5)
fingers_0.60-6.tgz(r-4.6-x86_64)fingers_0.60-6.tgz(r-4.6-arm64)fingers_0.60-6.tgz(r-4.5-x86_64)fingers_0.60-6.tgz(r-4.5-arm64)
fingers_0.60-6.tar.gz(r-4.7-arm64)fingers_0.60-6.tar.gz(r-4.7-x86_64)fingers_0.60-6.tar.gz(r-4.6-arm64)fingers_0.60-6.tar.gz(r-4.6-x86_64)
fingers_0.60-6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fingers/json (API)
| # Install 'fingers' in R: |
| install.packages('fingers', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kbroman/fingers/issues
Last updated from:12b2ec8593. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 111 | ||
| linux-devel-x86_64 | OK | 118 | ||
| source / vignettes | OK | 138 | ||
| linux-release-arm64 | OK | 104 | ||
| linux-release-x86_64 | OK | 125 | ||
| macos-release-arm64 | OK | 98 | ||
| macos-release-x86_64 | OK | 159 | ||
| macos-oldrel-arm64 | OK | 76 | ||
| macos-oldrel-x86_64 | OK | 175 | ||
| windows-devel | OK | 68 | ||
| windows-release | OK | 66 | ||
| windows-oldrel | OK | 68 | ||
| wasm-release | OK | 95 |
Exports:avesd.Dsibavesd.Durcalc.distchoose.revcluster.statcluster.stat.subcomp.famscutoffcutoff.llrdist.imagefingersfreqinheritinherit2llrdistMsibMurparse.hclustparse.hclust.allpull.markerssamppopsimrapdsimulfamstrue.fams
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Data on Aedes aegypti | aedes |
| Calculate simple distance matrix | calc.dist |
| Calculate measure of quality of inferred clusters | cluster.stat |
| Compare two sets of clusters | comp.fams |
| Calculate cutoff for clustering with RAPD markers | cutoff |
| Calculate cutoff for clustering with RAPD markers | cutoff.llr |
| Plot distance matrix | dist.image |
| Infer clusters of related individuals | fingers |
| Estimate RAPD allele frequencies | freq |
| Calculate distance matrix based on log likelihood ratio | llrdist |
| Extract markers with allele frequencies in specified range | pull.markers |
| Schistosome data | shiff1 |
| Schistosome data | shiff2 |
| Schistosome data | shiff3 |
| Simulate RAPD data | simrapd |
| Simulate RAPD data | simulfams |
| Identify the true clusters | true.fams |
