Package: lineup 0.44

lineup: Lining Up Two Sets of Measurements

Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues. Broman et al. (2015) <doi:10.1534/g3.115.019778>.

Authors:Karl W Broman [aut, cre]

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lineup.pdf |lineup.html✨
lineup/json (API)
NEWS

# Install 'lineup' in R:
install.packages('lineup', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kbroman/lineup/issues

Datasets:
  • expr1 - Example gene expression data
  • expr2 - Example gene expression data
  • f2cross - Example experimental cross data
  • genepos - Genomic positions of genes in simulated expression data
  • pmap - Physical map of markers

On CRAN:

13 exports 4 stars 1.12 score 3 dependencies 65 scripts 385 downloads

Last updated 2 months agofrom:98b6443e45. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 13 2024
R-4.5-win-x86_64OKSep 13 2024
R-4.5-linux-x86_64OKSep 13 2024
R-4.4-win-x86_64OKSep 13 2024
R-4.4-mac-x86_64OKSep 13 2024
R-4.4-mac-aarch64OKSep 13 2024
R-4.3-win-x86_64OKSep 13 2024
R-4.3-mac-x86_64OKSep 13 2024
R-4.3-mac-aarch64OKSep 13 2024

Exports:calc.locallodcombinedistcorbetw2matdisteedistegfind.gene.pseudomarkerfindCommonIDfscalelineupversionomitdiagplot2distplotEGclasspulldiag

Dependencies:classMASSqtl

R/lineup user guide

Rendered fromlineup.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2020-10-19
Started: 2015-06-23