Package: lineup 0.44

lineup: Lining Up Two Sets of Measurements

Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues. Broman et al. (2015) <doi:10.1534/g3.115.019778>.

Authors:Karl W Broman [aut, cre]

lineup_0.44.tar.gz
lineup_0.44.zip(r-4.7)lineup_0.44.zip(r-4.6)lineup_0.44.zip(r-4.5)
lineup_0.44.tgz(r-4.6-x86_64)lineup_0.44.tgz(r-4.6-arm64)lineup_0.44.tgz(r-4.5-x86_64)lineup_0.44.tgz(r-4.5-arm64)
lineup_0.44.tar.gz(r-4.7-arm64)lineup_0.44.tar.gz(r-4.7-x86_64)lineup_0.44.tar.gz(r-4.6-arm64)lineup_0.44.tar.gz(r-4.6-x86_64)
lineup_0.44.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
lineup/json (API)
NEWS

# Install 'lineup' in R:
install.packages('lineup', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/lineup/issues

Datasets:
  • expr1 - Example gene expression data
  • expr2 - Example gene expression data
  • f2cross - Example experimental cross data
  • genepos - Genomic positions of genes in simulated expression data
  • pmap - Physical map of markers

On CRAN:

Conda:

5.74 score 4 stars 92 scripts 232 downloads 13 exports 3 dependencies

Last updated from:16106749d7. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK152
linux-devel-x86_64OK199
source / vignettesOK207
linux-release-arm64OK171
linux-release-x86_64OK141
macos-release-arm64OK122
macos-release-x86_64OK183
macos-oldrel-arm64OK126
macos-oldrel-x86_64OK314
windows-develOK116
windows-releaseOK146
windows-oldrelOK104
wasm-releaseOK152

Exports:calc.locallodcombinedistcorbetw2matdisteedistegfind.gene.pseudomarkerfindCommonIDfscalelineupversionomitdiagplot2distplotEGclasspulldiag

Dependencies:classMASSqtl

R/lineup user guide

Rendered fromlineup.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2026-05-25
Started: 2015-06-23