Package: lmmlite 0.2-2

lmmlite: Simple LMM Fitter for QTL Mapping

A port of parts of 'pylmm' for fitting linear mixed models relevant to genome-wide association studies (GWAS) and quantitative trait locus (QTL) mapping.

Authors:Karl W Broman [aut, cre]

lmmlite_0.2-2.tar.gz
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lmmlite_0.2-2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
lmmlite/json (API)

# Install 'lmmlite' in R:

install.packages('lmmlite', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/lmmlite/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

recla - Example kinship, phenotype, and covariate data

On CRAN:

cpp

3.86 score 12 stars 12 scripts 4 exports 2 dependencies

Last updated from:147b3d3f75. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	106
linux-devel-x86_64	OK	139
source / vignettes	OK	234
linux-release-arm64	OK	106
linux-release-x86_64	OK	140
macos-release-arm64	OK	113
macos-release-x86_64	OK	251
macos-oldrel-arm64	OK	127
macos-oldrel-x86_64	OK	219
windows-devel-arm64	OK	244
windows-devel-x86_64	OK	115
windows-release-arm64	OK	292
windows-release-x86_64	OK	98
windows-oldrel-x86_64	OK	140
wasm-release	OK	113

Exports:calcLL eigen_rotation fitLMM getMLsoln

Dependencies:Rcpp RcppEigen

R/lmmlite user guide

Rendered fromlmmlite.Rmdusingknitr::rmarkdown

Last update: 2026-06-01
Started: 2015-11-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate log likelihood for a given heritability	calcLL
eigen decomposition + rotation	eigen_rotation
Fit a linear mixed model	fitLMM
Get MLEs for coefficients and variance	getMLsoln
Example kinship, phenotype, and covariate data	recla