Package: lmmlite 0.2-2

lmmlite: Simple LMM Fitter for QTL Mapping

A port of parts of 'pylmm' for fitting linear mixed models relevant to genome-wide association studies (GWAS) and quantitative trait locus (QTL) mapping.

Authors:Karl W Broman [aut, cre]

lmmlite_0.2-2.tar.gz
lmmlite_0.2-2.zip(r-4.7)lmmlite_0.2-2.zip(r-4.6)lmmlite_0.2-2.zip(r-4.5)
lmmlite_0.2-2.tgz(r-4.6-x86_64)lmmlite_0.2-2.tgz(r-4.6-arm64)lmmlite_0.2-2.tgz(r-4.5-x86_64)lmmlite_0.2-2.tgz(r-4.5-arm64)
lmmlite_0.2-2.tar.gz(r-4.7-arm64)lmmlite_0.2-2.tar.gz(r-4.7-x86_64)lmmlite_0.2-2.tar.gz(r-4.6-arm64)lmmlite_0.2-2.tar.gz(r-4.6-x86_64)
lmmlite_0.2-2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
lmmlite/json (API)

# Install 'lmmlite' in R:

install.packages('lmmlite', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/lmmlite/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

recla - Example kinship, phenotype, and covariate data

On CRAN:

cpp

4.12 score 11 stars 12 scripts 4 exports 2 dependencies

Last updated from:147b3d3f75. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	135
linux-devel-x86_64	OK	154
source / vignettes	OK	209
linux-release-arm64	OK	140
linux-release-x86_64	OK	146
macos-release-arm64	OK	93
macos-release-x86_64	OK	327
macos-oldrel-arm64	OK	104
macos-oldrel-x86_64	OK	424
windows-devel	OK	206
windows-release	OK	116
windows-oldrel	OK	124
wasm-release	OK	127

Exports:calcLL eigen_rotation fitLMM getMLsoln

Dependencies:Rcpp RcppEigen

R/lmmlite user guide

Rendered fromlmmlite.Rmdusingknitr::rmarkdown

Last update: 2026-06-01
Started: 2015-11-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate log likelihood for a given heritability	calcLL
eigen decomposition + rotation	eigen_rotation
Fit a linear mixed model	fitLMM
Get MLEs for coefficients and variance	getMLsoln
Example kinship, phenotype, and covariate data	recla