Package: lmmlite 0.2-2
lmmlite: Simple LMM Fitter for QTL Mapping
A port of parts of 'pylmm' for fitting linear mixed models relevant to genome-wide association studies (GWAS) and quantitative trait locus (QTL) mapping.
Authors:
lmmlite_0.2-2.tar.gz
lmmlite_0.2-2.zip(r-4.7)lmmlite_0.2-2.zip(r-4.6)lmmlite_0.2-2.zip(r-4.5)
lmmlite_0.2-2.tgz(r-4.6-x86_64)lmmlite_0.2-2.tgz(r-4.6-arm64)lmmlite_0.2-2.tgz(r-4.5-x86_64)lmmlite_0.2-2.tgz(r-4.5-arm64)
lmmlite_0.2-2.tar.gz(r-4.7-arm64)lmmlite_0.2-2.tar.gz(r-4.7-x86_64)lmmlite_0.2-2.tar.gz(r-4.6-arm64)lmmlite_0.2-2.tar.gz(r-4.6-x86_64)
lmmlite_0.2-2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
lmmlite/json (API)
NEWS
| # Install 'lmmlite' in R: |
| install.packages('lmmlite', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kbroman/lmmlite/issues
Datasets:
- recla - Example kinship, phenotype, and covariate data
Last updated from:147b3d3f75. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 135 | ||
| linux-devel-x86_64 | OK | 154 | ||
| source / vignettes | OK | 209 | ||
| linux-release-arm64 | OK | 140 | ||
| linux-release-x86_64 | OK | 146 | ||
| macos-release-arm64 | OK | 93 | ||
| macos-release-x86_64 | OK | 327 | ||
| macos-oldrel-arm64 | OK | 104 | ||
| macos-oldrel-x86_64 | OK | 424 | ||
| windows-devel | OK | 206 | ||
| windows-release | OK | 116 | ||
| windows-oldrel | OK | 124 | ||
| wasm-release | OK | 127 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate log likelihood for a given heritability | calcLL |
| eigen decomposition + rotation | eigen_rotation |
| Fit a linear mixed model | fitLMM |
| Get MLEs for coefficients and variance | getMLsoln |
| Example kinship, phenotype, and covariate data | recla |
