Package: mbmixture 0.4

mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.

Authors:Karl W Broman [aut, cre]

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mbmixture.pdf |mbmixture.html
mbmixture/json (API)
NEWS

# Install 'mbmixture' in R:
install.packages('mbmixture', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kbroman/mbmixture/issues

Datasets:
  • mbmixdata - Example dataset for mbmixture package

On CRAN:

4.48 score 6 stars 5 scripts 167 downloads 6 exports 1 dependencies

Last updated 2 years agofrom:e930074fd0. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 22 2024
R-4.5-winOKNov 22 2024
R-4.5-linuxOKNov 22 2024
R-4.4-winOKNov 22 2024
R-4.4-macOKNov 22 2024
R-4.3-winOKNov 22 2024
R-4.3-macOKNov 22 2024

Exports:bootstrapNullbootstrapSEmbmix_loglikmle_emle_pmle_pe

Dependencies:numDeriv

R/mbmixture User Guide

Rendered frommbmixture.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2020-10-13
Started: 2018-08-11