Package: mbmixture 0.7-1

mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.

Authors:Karl W Broman [aut, cre]

mbmixture_0.7-1.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mbmixture/json (API)

# Install 'mbmixture' in R:

install.packages('mbmixture', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/mbmixture/issues

Datasets:

mbmixdata - Example dataset for mbmixture package

On CRAN:

5.24 score 5 stars 8 scripts 263 downloads 6 exports 1 dependencies

Last updated from:b30124dd96. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	142
source / vignettes	OK	193
linux-release-x86_64	OK	138
macos-release-arm64	OK	88
macos-oldrel-arm64	OK	76
windows-devel	OK	73
windows-release	OK	78
windows-oldrel	OK	74
wasm-release	OK	150

Exports:bootstrapNull bootstrapSE mbmix_loglik mle_e mle_p mle_pe

Dependencies:numDeriv

R/mbmixture User Guide

Rendered frommbmixture.Rmdusingknitr::rmarkdown

Last update: 2026-07-05
Started: 2018-08-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bootstrap to assess significance	bootstrapNull
Bootstrap to get standard errors	bootstrapSE
log likelihood function for microbiome mixture	mbmix_loglik
Example dataset for mbmixture package	mbmixdata
MLE of e for fixed p	mle_e
MLE of p for fixed e	mle_p
Find MLEs for microbiome mixture	mle_pe