Package: simcross 0.6
simcross: Simulate Experimental Crosses
Simulate and plot general experimental crosses. The focus is on simulating genotypes with an aim towards flexibility rather than speed. Meiosis is simulated following the Stahl model, in which chiasma locations are the superposition of two processes: a proportion p coming from a process exhibiting no interference, and the remainder coming from a process following the chi-square model.
Authors:
simcross_0.6.tar.gz
simcross_0.6.zip(r-4.5)simcross_0.6.zip(r-4.4)simcross_0.6.zip(r-4.3)
simcross_0.6.tgz(r-4.4-x86_64)simcross_0.6.tgz(r-4.4-arm64)simcross_0.6.tgz(r-4.3-x86_64)simcross_0.6.tgz(r-4.3-arm64)
simcross_0.6.tar.gz(r-4.5-noble)simcross_0.6.tar.gz(r-4.4-noble)
simcross_0.6.tgz(r-4.4-emscripten)simcross_0.6.tgz(r-4.3-emscripten)
simcross.pdf |simcross.html✨
simcross/json (API)
NEWS
| # Install 'simcross' in R: |
| install.packages('simcross', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kbroman/simcross/issues
- AILped - Example AIL pedigree
- mouseL_cox - Mouse chromosome lengths
- mouseL_mgi - Mouse chromosome lengths
Last updated 12 months agofrom:1a4609495b. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win-x86_64 | OK | Nov 12 2024 |
| R-4.5-linux-x86_64 | OK | Nov 12 2024 |
| R-4.4-win-x86_64 | OK | Nov 12 2024 |
| R-4.4-mac-x86_64 | OK | Nov 12 2024 |
| R-4.4-mac-aarch64 | OK | Nov 12 2024 |
| R-4.3-win-x86_64 | OK | Nov 12 2024 |
| R-4.3-mac-x86_64 | OK | Nov 12 2024 |
| R-4.3-mac-aarch64 | OK | Nov 12 2024 |
Exports:calc_LstarCCcolorscheck_pedigreecollapse_do_allelesconvert2genoconvert2geno_allchrcreate_parentcrossget_genoplot_crosslinesplot_indsim_4way_pedigreesim_ail_pedigreesim_ail_pedigree_fix_nsim_crossoverssim_do_pedigreesim_do_pedigree_fix_nsim_dof1_pedigreesim_from_pedigreesim_from_pedigree_allchrsim_meiosissim_ril_pedigreewhere_het
Dependencies:Rcpp
