Package: simcross 0.6

simcross: Simulate Experimental Crosses

Simulate and plot general experimental crosses. The focus is on simulating genotypes with an aim towards flexibility rather than speed. Meiosis is simulated following the Stahl model, in which chiasma locations are the superposition of two processes: a proportion p coming from a process exhibiting no interference, and the remainder coming from a process following the chi-square model.

Authors:Karl W Broman [aut, cre]

simcross_0.6.tar.gz
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simcross.pdf |simcross.html✨
simcross/json (API)
NEWS

# Install 'simcross' in R:
install.packages('simcross', repos = c('https://kbroman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kbroman/simcross/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda-Forge:

cpp

5.06 score 6 stars 19 scripts 192 downloads 1 mentions 23 exports 1 dependencies

Last updated 1 years agofrom:1a4609495b. Checks:11 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 10 2025
R-4.5-win-x86_64OKFeb 10 2025
R-4.5-mac-x86_64OKFeb 10 2025
R-4.5-mac-aarch64OKFeb 10 2025
R-4.5-linux-x86_64OKFeb 10 2025
R-4.4-win-x86_64OKFeb 10 2025
R-4.4-mac-x86_64OKFeb 10 2025
R-4.4-mac-aarch64OKFeb 10 2025
R-4.3-win-x86_64OKFeb 10 2025
R-4.3-mac-x86_64OKFeb 10 2025
R-4.3-mac-aarch64OKFeb 10 2025

Exports:calc_LstarCCcolorscheck_pedigreecollapse_do_allelesconvert2genoconvert2geno_allchrcreate_parentcrossget_genoplot_crosslinesplot_indsim_4way_pedigreesim_ail_pedigreesim_ail_pedigree_fix_nsim_crossoverssim_do_pedigreesim_do_pedigree_fix_nsim_dof1_pedigreesim_from_pedigreesim_from_pedigree_allchrsim_meiosissim_ril_pedigreewhere_het

Dependencies:Rcpp

R/simcross User Guide

Rendered fromsimcross.Rmdusingknitr::rmarkdownon Feb 10 2025.

Last update: 2021-07-31
Started: 2014-09-04